Publications in Medical Image Analysis Venues

NeuroImage

Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal agingNear-tubular fiber bundle segmentation for diffusion weighted imaging: Segmentation through frame reorientationQuantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractographyQuicksilver: Fast predictive image registration - A deep learning approach

TMI

A Locally Adaptive Regularization Based on Anisotropic Diffusion for Deformable Image Registration of Sliding OrgansDiseased Region Detection of Longitudinal Knee Magnetic Resonance Imaging DataLongitudinal Image Registration With Temporally-Dependent Image Similarity MeasurePerfusion Imaging: A Data Assimilation ApproachPORTR: Pre-Operative and Post-Recurrence Brain Tumor RegistrationRestoration of DWI Data Using a Rician LMMSE EstimatorSimulation-Based Joint Estimation of Body Deformation and Elasticity Parameters for Medical Image Analysis

MEDIA

Automatic atlas-based three-label cartilage segmentation from MR knee imagesFast predictive simple geodesic regressionLarge deformation diffeomorphic registration of diffusion-weighted imaging dataMulti-modal registration for correlative microscopy using image analogiesSegmentation with area constraintsShape analysis based on depth-orderingSplines for diffeomorphismsStatistical atlas construction via weighted functional boxplots

MICCAI

A Deep Network for Joint Registration and Reconstruction of Images with PathologiesAnatomical Data Augmentation via Fluid-Based Image RegistrationAppearance Normalization of Histology SlidesAutomatic Optic Nerve Sheath Measurement in Point-of-Care UltrasoundContextual Additive Networks to Efficiently Boost 3D Image SegmentationsDeepAtlas: Joint Semi-supervised Learning of Image Registration and SegmentationDepth-Based Shape-AnalysisDiffusion Propagator Estimation Using Radial Basis FunctionsDTI Longitudinal Atlas Construction as an Average of Growth ModelsExploratory Population Analysis with Unbalanced Optimal TransportFast Predictive Image RegistrationFast Predictive Simple Geodesic RegressionFiber Bundle Estimation and ParameterizationFinsler Tractography for White Matter Connectivity Analysis of the Cingulum BundleFluid Registration Between Lung CT and Stationary Chest Tomosynthesis ImagesGeodesic Regression for Image Time-SeriesGeodesic-Loxodromes for Diffusion Tensor Interpolation and Difference MeasurementGeometric MetamorphosisGeometric-Feature-Based Spectral Graph Matching in Pharyngeal Surface RegistrationGlobal Medical Shape Analysis Using the Laplace-Beltrami SpectrumLarge Deformation Diffeomorphic Registration of Diffusion-Weighted ImagesLarge Deformation Diffeomorphic Registration of Diffusion-Weighted Images with Explicit Orientation OptimizationLarge Deformation Image Classification Using Generalized Locality-Constrained Linear CodingLongitudinal Image Registration with Non-uniform Appearance ChangeLow-Rank to the Rescue - Atlas-Based Analyses in the Presence of PathologiesMemory Efficient LDDMM for Lung CTMetamorphic Geodesic RegressionModel Criticism for Regression on the GrassmannianMultiple Instance Learning for Heterogeneous Images: Training a CNN for HistopathologyOutlier Rejection for Diffusion Weighted ImagingPatient-Specific Registration of Pre-operative and Post-recurrence Brain Tumor MRI ScansPIANO: Perfusion Imaging via Advection-DiffusionPrediction-driven Respiratory Motion Atlas Formation for 4D Image-guided Radiation Therapy in LungRegistration of Pathological ImagesRiemannian metrics for statistics on shapes: parallel transport and scale invarianceRobust model-based transformation and averaging of diffusion weighted images - applied to diffusion weighted atlas constructionRobust Multimodal Dictionary LearningSliding Geometries in Deformable Image RegistrationSparse Scale-Space Decomposition of Volume Changes in Deformations FieldsSpatial Component Analysis to Mitigate Multiple Testing in Voxel-Based AnalysisSpatio-temporal Image Analysis for Longitudinal and Time-Series Image Data - Second International Workshop, STIA 2012, Held in Conjunction with MICCAI 2012, Nice, France, October 1, 2012. ProceedingsSpatio-temporal Image Analysis for Longitudinal and Time-Series Image Data - Third International Workshop, STIA 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 18, 2014, Revised Selected PapersSplines for Diffeomorphic Image RegressionStudying Cerebral Vasculature Using Structure Proximity and Graph KernelsThe Endoscopogram: A 3D Model Reconstructed from Endoscopic Video FramesTime-Warped Geodesic RegressionTopological Descriptors of Histology ImagesTubular Surface Evolution for Segmentation of the Cingulum Bundle from DW-MRIUncertainty Quantification for LDDMM Using a Low-Rank Hessian ApproximationVoteNet: A Deep Learning Label Fusion Method for Multi-atlas SegmentationWeighted Functional Boxplot with Application to Statistical Atlas Construction

IPMI

Constructing Shape Spaces from a Topological PerspectiveCortical Correspondence with Probabilistic Fiber ConnectivityDiseased Region Detection of Longitudinal Knee MRI DataGroup Testing for Longitudinal DataGroup-Wise Cortical Correspondence via Sulcal Curve-Constrained Entropy MinimizationInformation Processing in Medical Imaging - 25th International Conference, IPMI 2017, Boone, NC, USA, June 25-30, 2017, ProceedingsOrthotropic Thin Shell Elasticity Estimation for Surface Registration

ISBI

A Method for Normalizing Histology Slides for Quantitative AnalysisA pediatric airway atlas and its application in subglottic stenosisAutomatic multi-atlas-based cartilage segmentation from knee MR imagesAutomatic three-label bone segmentation from knee MR imagesDeformable image registration of sliding organs using anisotropic diffusive regularizationEfficient registration of pathological images: A joint PCA/image-reconstruction approachFast predictive multimodal image registrationHierarchical task-driven feature learning for tumor histologyLongitudinal three-label segmentation of knee cartilagePhysically-based deformable image registration with material property and boundary condition estimationScoliosis screening and monitoring using self contained ultrasound and neural networksSemi-coupled dictionary learning for deformation predictionStatistical Shape Analysis of Brain Structures Using Spherical WaveletsUltrasound spectroscopyVotenet++: Registration Refinement For Multi-Atlas SegmentationVotenet+: An Improved Deep Learning Label Fusion Method for Multi-Atlas Segmentation